Very interesting first point and good to know. I will keep this in mind.
After realizing the error, I submitted form 5500-EZ again but checked the amend box, intentionally entered 1/1/2017 to 12/31/2017 and entered the numbers using 2017 statements. This was the IRS agent's advice to show my 2017 numbers were below the $250k threshold. I then also correctly submitted the 2021 5500-EZ with identical numbers to the accidentally 2017 numbers.
Unfortunately, I've now submitted both 2017 and 2021 correctly. (I have not filed 2018 or 2019) Although, like I said above, this was the phone advice the IRS agent gave me. It "should" have automatically removed the penalties. I did not write his ID number down or record the call.
I appreciate your reply. I remained calm all the way up to learning I may need to go to appeals and hire a firm to help me out. But you are correct that I should take a few breaths and keep working the problem. I do far too much DIY work that I should hire out, even in my regular business operations, so I agree that I need to start paying a professional.