"Employer deposited employee deferrals late in 2023. One 'set' of late contributions was deposited during 2023. The excise tax associated with this set is below $100. Another set of deferrals were not deposited until 2026. The excise tax on that set is over $100. In reporting on the Form 5330 for 2023, I assume all late deferrals are combined for 2023 and the tax calculated on the total lost earnings, regardless of when
the late deferrals were actually corrected (with additional Form 5330s for 2024, 2025 and 2026 for the contributions that were not corrected until 2026). Employer is filing a VFCP application for the late contributions in 2023.
'How do the waiver of excise tax rules (PTE 2002-51) apply for the excise taxes owed for 2023? Can we view the two sets of late deferrals separately, where the excise taxes on the first 'set' can be waived because they are
less than $100 and just pay the excise tax on the other set (the tax is over $100 and the correction was well past the 180 day deadline for waiver).
'I am inclined to just treat it as one prohibited transaction for the year and pay the entire excise tax owed. But I am seeing some discussion about only reporting the late deferrals in 2023 that were not corrected until 2026 because the excise tax for the other late
deferrals that were corrected in 2023 are waived because they were under $100. I can't find any legal authority for this position and wanted to see if anyone else has had this issue come up."