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To put some dates on the original question ... am I understanding it correctly, that you are talking about a plan adopted (say) 8/15/2025 with an initial effective plan year of 1/1/2024-12/31/2024? If that's the case, the first Form 5500 will be the 2025 form, due 7/31/2026 or 10/15/2026 on extension. You will check the box for a retroactively adopted plan on the 2025 form. You do not file a 2024 Form 5500 at all. However you will need to attach both the 2024 and 2025 Schedule SB to the 2025 filing.

Conversely, one might wonder what idiot came up with the idea of auditing something that you don't need to. Congress and the IRS have given plan administrators explicit permission to rely upon participant self-certification of hardships, unless they have actual knowledge to the contrary. So why would the plan administrator go looking for trouble when they had no duty to do so, nor liability for not doing so? There can be no good that comes from this, only problems.

In my experience, an independent qualified public accountant might close the work-papers file and release the IQPA's report on the plan's financial statements after the IQPA has received a comfort letter from a recognized practitioner who confirms that she has been engaged to see through the correction of the errors and is confident that the corrections will be sufficient to preserve tax-qualified status and restore ERISA breaches.